PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_A8FC9D468.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 283aa    MW: 31936.5 Da    PI: 8.642
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_A8FC9D468.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18139225193
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f+k++++s+v++  +l lp +f+++h  ++ ++ +++lede+g +++  +   +++ +  l++GW++F   ++L++gD++vF+l + +
  Traes_1BL_A8FC9D468.1 139 FVKTMVRSHVSSCFWLGLPSSFCKDHL-PP-REHKMVLEDEEGVEFDAVY--IGNRTG--LSGGWRGFSMHHDLEDGDSLVFELAEPD 220
                            89*********************9994.44.4459***************..555444..***********************98767 PP

                            EE..E CS
                     B3  89 efelv 93 
                            +f+ +
  Traes_1BL_A8FC9D468.1 221 RFKIY 225
                            77444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-21131228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-24132227IPR015300DNA-binding pseudobarrel domain
CDDcd100173.89E-26137228No hitNo description
PROSITE profilePS5086312.464139230IPR003340B3 DNA binding domain
SMARTSM010199.6E-23139230IPR003340B3 DNA binding domain
PfamPF023624.0E-17139225IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MATAEASSAS GAGAAYEEER RKRILDNLKH LEDLGISKMA KSLIQATRQQ DKTPRASPKS  60
RKKFEATTEV RRSSRARTTV SYKDDFPELD DFVRRRRVSK SVDNGRGYTG RISSYQQQQR  120
AFKRAEKLQD SLDPDNPSFV KTMVRSHVSS CFWLGLPSSF CKDHLPPREH KMVLEDEEGV  180
EFDAVYIGNR TGLSGGWRGF SMHHDLEDGD SLVFELAEPD RFKIYISKAI EDGKEAEPND  240
KNADVDSDSA QEVPDQTDSP VSEPPSSPEP LKGAKRRKLR GRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270276LKGAKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719300.0AK371930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2143H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568233.11e-162PREDICTED: B3 domain-containing protein Os05g0481400
SwissprotQ5KQI41e-134Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLW5A4W60.0W5A4W6_WHEAT; Uncharacterized protein
STRINGBRADI2G22130.11e-162(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-42B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]